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Force Disulfide

This documentation is deprecated, please use the new documentation site instead. The force disulfide protocol mutates a specified set of residue pairs to cysteines, forms disulfide bonds between them, and then performs a constrained Rosetta relaxation of the entire...

API

The Cyrus API The Cyrus API is a cloud based system that runs molecular modeling protocols developed by Cyrus Biotechnology.  Each service in the API shares a common interface for submitting and managing jobs as well as retrieving results. A Command Line Application...

Single Chain HM

This documentation is deprecated, please use the new documentation site instead. The disulfide single chain homology modeling API creates homology models of single chain proteins using the Rosetta hybridize homology modeling method.  By default, the hybridize method...

Disulfidizer

This documentation is deprecated, please use the new documentation site instead. The Disulfidizer API runs the Rosetta “Disulfidizer” protocol. The disfulfidizer protocol attempts to stabilize a protein by making disulfide bonds. This method has been used widely with...

API Services

This documentation is deprecated, please use the new documentation site instead. Disulfide Modeling Cyrus provides you with three options for disulfide modeling: Disulfidizer, Force Disulfide, and Single Chain HM.  They are described in greater detail below; in this...