by Elizabeth Swanberg | Jun 5, 2019 | Getting Started, Tutorials
Cyrus Bench includes many powerful tools for designing proteins, predicting structures, and reducing immunogenicity. We’ve created this Introduction to showcase the most important features in Bench and how to use them. You can view all the articles in each...
by kkhar | Oct 16, 2018 | Getting Started, Tutorials
Download Tutorial Three (PDF) Tutorial Three: Adding Point Mutations and Using Loop Rebuild Estimated Time: 20 minutes This tutorial will instruct users how point mutations can be added to structures using the Design Action, how loops can be refined through Loop...
by Kristie Barker | Oct 10, 2018 | Tutorials
There are three design methods that you can run in CAD: Design , Flex Design , and Relax Design . They are all set up in the same way using the following steps… 1.) Load a structure Click on , which will open a new tab in the center window. Load a structure...
by Kristie Barker | Oct 2, 2018 | Getting Started, Tutorials
Download Tutorial Four (PDF) Tutorial Four: Design Increased Affinity to a Peptide using Relax Design, Sequence Logo Estimated time: 30 minutes This tutorial will instruct users how to use Relax Design to increase the affinity between two peptides, including how to...
by Kristie Barker | Oct 2, 2018 | Getting Started, Tutorials
Download Tutorial Two (PDF) Tutorial Two: Relax Structure, Scatter Plot, Minimize Structure Estimated time: 30 minutes This tutorial will instruct users how to generate optimized (low energy) protein conformations using the Relax and Minimize Actions, and the Scatter...
by admin | Oct 2, 2018 | Getting Started, Tutorials
Download Tutorial One (PDF) Tutorial One: Create Project, Load Structure, Prepare, Viewer, Compare Structures Estimated time: 30 minutes This tutorial will teach you how to begin working with a structure in Cyrus Bench, including the different ways structures...
