by Sam | Sep 29, 2020 | API
This documentation is deprecated, please use the new documentation site instead. The Disulfidizer API runs the Rosetta “Disulfidizer” protocol. The disfulfidizer protocol attempts to stabilize a protein by making disulfide bonds. This method has been used widely with...
by Sam | Sep 29, 2020 | API
This documentation is deprecated, please use the new documentation site instead. Disulfide Modeling Cyrus provides you with three options for disulfide modeling: Disulfidizer, Force Disulfide, and Single Chain HM. They are described in greater detail below; in this...
by Sam | Sep 29, 2020 | API
This documentation is deprecated, please use the new documentation site instead. Jobs can be submitted and results retrieved using a python 3 client library. Each API service has a separate client object which is constructed with the following arguments: client_id...
by Sam | Sep 29, 2020 | API
This documentation is deprecated, please use the new documentation site instead. The Cyrus Engine tool is expressed via the cyrus command line application that is used to submit API commands, retrieve the results, and check the status of running jobs. All available...
by Sam | Sep 29, 2020 | API
All requests to the API are authenticated with a client ID and secret key to protect your data. The client ID and secret key can be obtained by logging into https://api-authorization.cyrusbio.com/ with your Cyrus account. You will need to obtain the client ID and...
by Elizabeth Swanberg | Sep 23, 2019 | Tutorial Videos, Videos
This initial training video will introduce users to Cyrus Bench by demonstrating how to use the structure loader. This demonstration includes how to load the small molecules that are part of your structure, such as key water or metal ions, and how to only load certain...
by Elizabeth Swanberg | Sep 23, 2019 | Tutorial Videos, Videos
This instructional video will guide you through the process of using the Geneious software to analyze your results from Design runs in Cyrus Bench. In this example Geneious will be used to identify the unique sequences from your Design runs. It will also be shown how...
by Elizabeth Swanberg | Sep 23, 2019 | Tutorial Videos, Videos
This second training video will demonstrate how to use the many tools within the structure viewer including: How to view the structure sequence How to change between ribbon, stick, and sphere mode How to color the structure How to select only certain residues, such as...
by Elizabeth Swanberg | Sep 18, 2019 | Structure Prediction
OVERVIEW Homology Modeling (HM) is the most effective method for predicting protein structure from its sequence. This tool uses the structures of homologous proteins, or protein fragments, as an estimate for your protein structure and then models conformational...
by Elizabeth Swanberg | Sep 9, 2019 | FAQs
HOW DOES CREDIT ACCOUNTING WORK? All Actions, Structure Predictions, and Analysis tools consume credits. Anything that uses credits is activated with a green button. Though the button can say Run, Save and Run, or Run x Sequences depending on which tool is being...
