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Python Library Usage

This documentation is deprecated, please use the new documentation site instead. Jobs can be submitted and results retrieved using a python 3 client library.  Each API service has a separate client object which is constructed with the following arguments: client_id...

Command Line Usage

This documentation is deprecated, please use the new documentation site instead. The Cyrus Engine tool is expressed via the cyrus command line application that is used to submit API commands, retrieve the results, and check the status of running jobs. All available...

Authentication

 All requests to the API are authenticated with a client ID and secret key to protect your data. The client ID and secret key can be obtained by logging into https://api-authorization.cyrusbio.com/ with your Cyrus account. You will need to obtain the client ID and...

Homology Modeling

OVERVIEW Homology Modeling (HM) is the most effective method for predicting protein structure from its sequence. This tool uses the structures of homologous proteins, or protein fragments, as an estimate for your protein structure and then models conformational...

Credit Usage

HOW DOES CREDIT ACCOUNTING WORK? All Actions, Structure Predictions, and Analysis tools consume credits.  Anything that uses credits is activated with a green  button. Though the button can say Run, Save and Run, or Run x Sequences depending on which tool is being...

How can Bench be used for my custom project?

Cyrus Bench is meant to be provide an easy-to-use GUI so you can run Rosetta without the months of necessary training that are needed for the full version of Rosetta. Bench has the majority of Rosetta tools that are needed for most structure prediction, modeling or...