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Loop Rebuild

Last Updated: Jul 23, 2018 02:09PM PDT
NOTE:  An error message will appear if one or more CA...CA distances are detected to be too far apart in your structure after you click 'Save and Run'. You will get this error if the distance in the starting coordinates for the loop you are attempting to predict are greater than 4 Angstroms. Our current LoopRebuild implementation is not robust when making predictions for loops that start either broken or with significant geometric issues, so we cannot accept this kind of job at this time. We plan to upgrade LoopRebuild to accept loops with significant geometric issues in the near future.





1. https://guybrush.ucsf.edu/benchmarks/benchmarks/loop_modeling
2. https://www.rosettacommons.org/docs/latest/application_documentation/structure_prediction/loop_modeling/next-generation-KIC​
3. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0063090​
4. https://www.ncbi.nlm.nih.gov/pubmed/19644455​


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