by Elizabeth Swanberg | Aug 29, 2019 | Background, Background on Homology Modeling
Click to Download HM Diagram Outlined below is a diagram and step-by-step descriptions of how Homology Modeling (HM) runs. HM is the easiest tool to run in CAD, but it performs a complex set of functions. You can run HM by inputting a sequence and come back later to...
by Elizabeth Swanberg | Jan 2, 2019 | Background, Bench
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by Elizabeth Swanberg | Jan 2, 2019 | Background, Background on Homology Modeling
CYRUS BENCH HOMOLOGY: A HIGHLY AUTOMATED, AUTOMATED, CLOUD-ENABLED, POWERFUL, AND USER-FRIENDLY HOMOLOGY MODELING PIPELINE USING ROSETTA-CM Lucas G. Nivón, Ryan Gomoto, and Yifan Song Author Affiliations: Cyrus Biotechnology, Inc. 500 Yale Ave. N. Seattle WA...
by Elizabeth Swanberg | Jan 2, 2019 | Rosetta
ROSETTA SAMPLING METHODS Rosetta uses its energy function to determine whether a conformation is favorable. Using this function, it can sample a wide range of conformations in order to optimize protein structure in terms of score. Rosetta uses several ways of sampling...
by Elizabeth Swanberg | Dec 16, 2018 | Rosetta
Overview An Energy Function is one of the most important tools for modeling a molecular structure. It provides a way to determine if a structure is favorable compared to alternate conformations of the structure. For example, a hexose molecule molecule can form the 5...
