by Elizabeth Swanberg | Sep 5, 2019 | FAQs
Cyrus Bench is meant to be provide an easy-to-use GUI so you can run Rosetta without the months of necessary training that are needed for the full version of Rosetta. Bench has the majority of Rosetta tools that are needed for most structure prediction, modeling or...
by Elizabeth Swanberg | Sep 3, 2019 | Using Pymol with Bench, Workflows
Click to Download Zip file for...
by Elizabeth Swanberg | Aug 29, 2019 | Advanced use of Design, Workflows
One of the most effective ways to improve protein stability and solubility is to use evolutionary information to guide mutation selection. This workflow shows how you can create a multi-sequence alignment from homologs in the NCBI database, then sample the mutations...
by Elizabeth Swanberg | Aug 29, 2019 | Advanced use of Design, Workflows
Researchers often have a new sequence they want to model or use as a starting point for future design work. We have a quick and simple method for doing this 1.) Load the protein into CAD Use the as usual. Include or exclude any additional molecules in the file that...
by Elizabeth Swanberg | Aug 29, 2019 | Background, Background on Homology Modeling
Click to Download HM Diagram Outlined below is a diagram and step-by-step descriptions of how Homology Modeling (HM) runs. HM is the easiest tool to run in CAD, but it performs a complex set of functions. You can run HM by inputting a sequence and come back later to...
