by Elizabeth Swanberg | Jan 2, 2019 | Background, Bench
...
by Elizabeth Swanberg | Jan 2, 2019 | Background, Background on Homology Modeling
CYRUS BENCH HOMOLOGY: A HIGHLY AUTOMATED, AUTOMATED, CLOUD-ENABLED, POWERFUL, AND USER-FRIENDLY HOMOLOGY MODELING PIPELINE USING ROSETTA-CM Lucas G. Nivón, Ryan Gomoto, and Yifan Song Author Affiliations: Cyrus Biotechnology, Inc. 500 Yale Ave. N. Seattle WA...
by Elizabeth Swanberg | Jan 2, 2019 | Rosetta
ROSETTA SAMPLING METHODS Rosetta uses its energy function to determine whether a conformation is favorable. Using this function, it can sample a wide range of conformations in order to optimize protein structure in terms of score. Rosetta uses several ways of sampling...
by Elizabeth Swanberg | Jan 2, 2019 | Structure Prediction, Tools
OVERVIEW HM Antibody is a structure prediction tool for the variable region of antibodies. The protocol assumes that your sequence is a naturally-occuring antibody, which means that there is a limit to how much your input can diverge from the norm. Often, users have...
